miRBase entry: oan-mir-17

Stem-loop oan-mir-17


Accession
MI0006960
Description
Ornithorhynchus anatinus oan-mir-17 precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

24184 reads, 519 reads per million, 5 experiments
gucagaauaauguCAAAGUGCUUACAGUGCAGGUAGugguauguagaaucuACUGCAGUGAAGGCACUUGUagcauuauguugac
(((((.(((((((..((((((((.((.(((((.(((.............)))))))).)).))))))))...))))))).)))))

Structure
     a       -CA        A  G     G   uggua 
gucag auaaugu   AAGUGCUU CA UGCAG UAG     u
||||| |||||||   |||||||| || ||||| |||     g
caguu uauuacg   UUCACGGA GU ACGUC Auc     u
     g       aUG        A  G     -   uaaga 


Annotation confidence High
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Genome context
Ultra284: 6728095-6728179 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from oan-mir-17
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-17-5p

Accession MIMAT0007278
Description Ornithorhynchus anatinus oan-miR-17-5p mature miRNA
Sequence 14 - CAAAGUGCUUACAGUGCAGGUAG - 36
Evidence experimental
Illumina [1]

Mature oan-miR-17-3p

Accession MIMAT0007279
Description Ornithorhynchus anatinus oan-miR-17-3p mature miRNA
Sequence 52 - ACUGCAGUGAAGGCACUUGU - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004