miRBase entry: osa-MIR1432

Stem-loop osa-MIR1432


Accession
MI0006972
Description
Oryza sativa osa-MIR1432 precursor miRNA

Literature search
21 open access papers mention osa-MIR1432
(45 sentences)

Sequence

885 reads, 629 reads per million, 2 experiments
ccugugAUCAGGAGAGAUGACACCGACaucgccggaauucguucuuggucuugugccaugaugaauugaugguccguuugaugCAGGUGUCAUCUCCCCUGAACauagg
((((((.(((((.(((((((((((..(((((.(((((((((((..((((.....)))).)))))))......))))..)))))..))))))))))).))))).))))))

Structure
      A     A           GA     -c    ------       cu    c 
ccugug UCAGG GAGAUGACACC  Caucg  cgga      auucguu  uggu u
|||||| ||||| |||||||||||  |||||  ||||      |||||||  |||| u
ggauaC AGUCC CUCUACUGUGG  guagu  gccu      uaaguag  accg g
      A     C           AC     uu    gguagu       -u    u 


Annotation confidence Not enough data
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Genome context
Chr7: 23401702-23401810 [-]

Database links

Mature osa-miR1432-5p

Accession MIMAT0005966
Description Oryza sativa osa-miR1432-5p mature miRNA
Sequence 7 - AUCAGGAGAGAUGACACCGAC - 27
Evidence experimental
MPSS [1], Northern [1], cloned [2], 454 [3]
Database links

Mature osa-miR1432-3p

Accession MIMAT0022950
Description Oryza sativa osa-miR1432-3p mature miRNA
Sequence 84 - CAGGUGUCAUCUCCCCUGAAC - 104
Evidence experimental
Illumina [4]

References

  1. PubMed ID: 18312648
    Identification of novel and candidate miRNAs in rice by high throughput sequencing
    Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
    BMC Plant Biol (2008) 8:25

  2. PubMed ID: 18353984
    Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
    "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
    "Proc Natl Acad Sci U S A (2008) 105:4951-4956

  3. PubMed ID: 18323537
    Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
    "Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ"
    "Genome Res (2008) 18:571-584

  4. PubMed ID: 21901091
    Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
    Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
    PLoS Pathog (2011) 7:e1002176