miRBase entry: osa-MIR444b

Stem-loop osa-MIR444b


Accession
MI0006974
Description
Oryza sativa osa-MIR444b precursor miRNA
Gene family
MIPF0000402; MIR444

Literature search
25 open access papers mention osa-MIR444b
(68 sentences)

Sequence

3316 reads, 2333 reads per million, 2 experiments
augcaaggggauggugacaagcuuguggcagcaacugcacaucuugcaagaaaaucuuuaggguuuuucagaccauaccgaugauuuucuugcaaguugUGCAGUUGUUGUCUCAAGCUUGCUGCCucccuuugccaa
..(((((((((.((((.((((((((.(((((((((((((((.((((((((((((((.....(((((...)))))........)))))))))))))).))))))))))))))).)))))))).)))))))))))))...

Structure
-au         u    a        u               u              ---uuuag     u 
   gcaagggga ggug caagcuug ggcagcaacugcaca cuugcaagaaaauc        gguuu  
   ||||||||| |||| |||||||| ||||||||||||||| ||||||||||||||        ||||| u
   cguuucccu CCGU GUUCGAAC CUGUUGUUGACGUgu gaacguucuuuuag        ccaga  
aac         -    C        U               u              uagccaua     c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature osa-miR444b.2

Accession MIMAT0005968
Description Oryza sativa osa-miR444b.2 mature miRNA
Sequence 100 - UGCAGUUGUUGUCUCAAGCUU - 120
Evidence experimental
MPSS [1], Northern [1]
Database links

Mature osa-miR444b.1

Accession MIMAT0005969
Description Oryza sativa osa-miR444b.1 mature miRNA
Sequence 106 - UGUUGUCUCAAGCUUGCUGCC - 126
Evidence experimental
MPSS [1], Northern [1]
Database links

References

  1. PubMed ID: 18353984
    Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
    "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
    "Proc Natl Acad Sci U S A (2008) 105:4951-4956