Stem-loop sequence gga-mir-551

Accession MI0006983
Description Gallus gallus miR-551 stem-loop
Gene family MIPF0000360; mir-551
Stem-loop 
      --  - c     -         a         gg     aagac     -  g 
ccacca  ga g ugccc cauggcucc gaaaucaag  ugggu     cuugu ag a
||||||  || | ||||| ||||||||| |||||||||  |||||     ||||| || u
gguggu  cu c auggg gugucgggg cuuugguuc  accca     ggacg uc a
      ga  g u     u         a         au     ---gc     g  a
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Genome context
Coordinates (Gallus-gallus-4.0) Overlapping transcripts
chr9: 19886058-19886170 [-]
sense
Database links
  • ENTREZGENE: 100315945;MIR551

Mature sequence gga-miR-551-5p

Accession MIMAT0007289
Previous IDs gga-miR-551*
Sequence

26 -  

gaaaucaaggguggguaagaccu

 - 48

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Evidence experimental; cloned [1]
Predicted targets

Mature sequence gga-miR-551-3p

Accession MIMAT0007290
Previous IDs gga-miR-551
Sequence

66 -  

gcgacccauacuugguuucag

 - 86

Get sequence
Evidence experimental; cloned [1-2], Solexa [3]
Predicted targets

References

1
PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).
2
PMID:18511220 "Identification of novel chicken microRNAs and analysis of their genomic organization" Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH Gene. 418:34-40(2008).
3
PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).