miRBase entry: mdv1-mir-M9

Stem-loop mdv1-mir-M9


Accession
MI0006987
Description
Mareks disease virus type 1 mdv1-mir-M9 precursor miRNA


Sequence

gcgguUUUUCUCCUUCCCCCCGGAGUUcacuguaucguacguuguAAACUCCGAGGGCAGGAAAAAGugc
(((.((((..((((..(((.(((((((.((((((...))))..)).))))))).))).)))))))).)))

Structure
   g    UC    UC   C       c  --    u 
gcg uUUU  UCCU  CCC CGGAGUU ac  ugua  
||| ||||  ||||  ||| ||||||| ||  |||| c
cgu AAAA  AGGA  GGG GCCUCAA ug  gcau  
   G    --    -C   A       A  uu    g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AF243438.1: 8182-8251 [-]
Clustered miRNAs
8 other miRNAs are < 10 kb from mdv1-mir-M9
Name Accession Chromosome Start End Strand Confidence




Disease association
mdv1-mir-M9 is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature mdv1-miR-M9-5p

Accession MIMAT0005979
Description Mareks disease virus type 1 mdv1-miR-M9-5p mature miRNA
Sequence 6 - UUUUCUCCUUCCCCCCGGAGUU - 27
Evidence experimental
cloned [1], Northern [1], Illumina [2]

Mature mdv1-miR-M9-3p

Accession MIMAT0005980
Description Mareks disease virus type 1 mdv1-miR-M9-3p mature miRNA
Sequence 46 - AAACUCCGAGGGCAGGAAAAAG - 67
Evidence experimental
cloned [1], Northern [1], Illumina [2]

References

  1. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015

  2. PubMed ID: 18842708
    Sequence conservation and differential expression of Marek's disease virus microRNAs
    "Morgan R, Anderson A, Bernberg E, Kamboj S, Huang E, Lagasse G, Isaacs G, Parcells M, Meyers BC, Green PJ, Burnside J"
    "J Virol (2008) 82:12213-12220