Stem-loop sequence mdv1-mir-M9

Accession MI0006987
Description Mareks disease virus miR-M9 stem-loop
Stem-loop 
   g    uc    u   cc       c  --      
gcg uuuu  uccu ccc  cggaguu ac  uguau 
||| ||||  |||| |||  ||||||| ||  |||| c
cgu aaaa  agga ggg  gccucaa ug  gcaug 
   g    --    c   -a       a  uu
Get sequence
Genome context
Coordinates (EMBL:AF243438.1) Overlapping transcripts
AF243438.1: 8182-8251 [-]
intergenic
AF243438.1: 133369-133438 [+]
intergenic
Clustered miRNAs
< 10kb from mdv1-mir-M9
mdv1-mir-M1 AF243438.1: 136864-136939 [+]
mdv1-mir-M31 AF243438.1: 136539-136607 [+]
mdv1-mir-M11 AF243438.1: 136050-136114 [+]
mdv1-mir-M4 AF243438.1: 134363-134428 [+]
mdv1-mir-M2 AF243438.1: 134223-134296 [+]
mdv1-mir-M3 AF243438.1: 134075-134144 [+]
mdv1-mir-M12 AF243438.1: 133888-133949 [+]
mdv1-mir-M5 AF243438.1: 133601-133675 [+]
mdv1-mir-M9 AF243438.1: 133369-133438 [+]
mdv1-mir-M9 AF243438.1: 8182-8251 [-]
mdv1-mir-M5 AF243438.1: 7945-8019 [-]
mdv1-mir-M12 AF243438.1: 7671-7732 [-]
mdv1-mir-M3 AF243438.1: 7476-7545 [-]
mdv1-mir-M2 AF243438.1: 7324-7397 [-]
mdv1-mir-M4 AF243438.1: 7192-7257 [-]
mdv1-mir-M11 AF243438.1: 5506-5570 [-]
mdv1-mir-M31 AF243438.1: 5013-5081 [-]
mdv1-mir-M1 AF243438.1: 4681-4756 [-]

Mature sequence mdv1-miR-M9-5p

Accession MIMAT0005979
Previous IDs mdv1-miR-M9
Sequence

6 -  

uuuucuccuuccccccggaguu

 - 27

Get sequence
Evidence experimental; cloned [1], Northern [1], Solexa [2]

Mature sequence mdv1-miR-M9-3p

Accession MIMAT0005980
Previous IDs mdv1-miR-M9*
Sequence

46 -  

aaacuccgagggcaggaaaaag

 - 67

Get sequence
Evidence experimental; cloned [1], Northern [1], Solexa [2]

References

1
PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
2
PMID:18842708 "Sequence conservation and differential expression of Marek's disease virus microRNAs" Morgan R, Anderson A, Bernberg E, Kamboj S, Huang E, Lagasse G, Isaacs G, Parcells M, Meyers BC, Green PJ, Burnside J J Virol. 82:12213-12220(2008).