miRBase entry: oan-mir-1421y-3

Stem-loop oan-mir-1421y-3


Accession
MI0006994
Description
Ornithorhynchus anatinus oan-mir-1421y-3 precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

188 reads, 252 reads per million, 2 experiments
auggcacggugugAGGAGGGCACAUGUGGUACAGUgugauaguggaauaugcUGCAUCAUGCGUGACCUCCCCacaucguguugu
(((((((((((((.(((((.(((.((((((.(((((((.........))))))).)))))).))).))))).)))))))))))))

Structure
             A     G   A      A       aua 
auggcacggugug GGAGG CAC UGUGGU CAGUgug   g
||||||||||||| ||||| ||| |||||| |||||||   u
uguugugcuacaC CCUCC GUG GUACUA GUcguau   g
             C     A   C      C       aag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
X1: 44303056-44303140 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from oan-mir-1421y-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421y-5p

Accession MIMAT0007244
Description Ornithorhynchus anatinus oan-miR-1421y-5p mature miRNA
Sequence 14 - AGGAGGGCACAUGUGGUACAGU - 35
Evidence experimental
Illumina [1]

Mature oan-miR-1421y-3-3p

Accession MIMAT0009173
Description Ornithorhynchus anatinus oan-miR-1421y-3-3p mature miRNA
Sequence 53 - UGCAUCAUGCGUGACCUCCCC - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004