Stem-loop sequence oan-mir-1421y-3

Accession MI0006994
Description Ornithorhynchus anatinus miR-1421y-3 stem-loop
Gene family MIPF0000564; mir-1421
Stem-loop 
 ug          a     g   au     a       aua 
a  gcacggugug ggagg cac  guggu cagugug   g
|  |||||||||| ||||| |||  ||||| |||||||   u
u  ugugcuacac ccucc gug  uacua gucguau   g
 gu          c     a   cg     c       aag
Get sequence
Genome context
Coordinates (OANA5) Overlapping transcripts
X1: 44303056-44303140 [-]
antisense
ENSOANT00000030955 ; F6S1K5_ORNAN; intron 2
Clustered miRNAs
< 10kb from oan-mir-1421y-3
oan-mir-1421ac-1 X1: 44311290-44311413 [-]
oan-mir-1421ac-2 X1: 44308437-44308523 [-]
oan-mir-1414 X1: 44306726-44306812 [-]
oan-mir-1419c-3 X1: 44304901-44305008 [-]
oan-mir-1421ag-2 X1: 44303617-44303684 [-]
oan-mir-1421y-3 X1: 44303056-44303140 [-]
oan-mir-1421ai X1: 44301501-44301574 [-]
oan-mir-1421ab-1 X1: 44298540-44298604 [-]
oan-mir-1419d X1: 44298117-44298229 [-]
oan-mir-1419c-2 X1: 44296776-44296886 [-]
oan-mir-1421ag-1 X1: 44295490-44295574 [-]
oan-mir-1421y-2 X1: 44294920-44295029 [-]
oan-mir-1421ab-2 X1: 44293810-44293911 [-]
Database links

Mature sequence oan-miR-1421y-5p

Accession MIMAT0007244
Previous IDs oan-miR-1421y
Sequence

14 -  

aggagggcacaugugguacagu

 - 35

Get sequence
Evidence experimental; Solexa [1]

Mature sequence oan-miR-1421y-3-3p

Accession MIMAT0009173
Previous IDs oan-miR-1421y-3*
Sequence

53 -  

ugcaucaugcgugaccucccc

 - 73

Get sequence
Evidence experimental; Solexa [1]

References

1
PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).