miRBase entry: oan-mir-1421g-2

Stem-loop oan-mir-1421g-2


Accession
MI0007005
Description
Ornithorhynchus anatinus oan-mir-1421g-2 precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

4408 reads, 1999 reads per million, 4 experiments
ggugacguacggcacggugcgAGGGGGUCGUACGUCAUGCAGAgugauggcggaauaugcUGCAUGCGUGCGACCUCCUUacacagcacugggugucucc
((.((((..(((..(.(((.((((((((((((((.(((((((....((......))...))))))))))))))))))))).))).)..)))..)))).))

Structure
  u    ua   ca g   c              U       Agug  gg 
gg gacg  cgg  c gug gAGGGGGUCGUACG CAUGCAG    au  c
|| ||||  |||  | ||| |||||||||||||| |||||||    ||   
cc cugu  guc  g cac UUCCUCCAGCGUGC GUACGUc    ua  g
  u    gg   ac a   a              -       -gua  ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Contig7160: 3551-3650 [-]
Clustered miRNAs
13 other miRNAs are < 10 kb from oan-mir-1421g-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421g-5p

Accession MIMAT0006975
Description Ornithorhynchus anatinus oan-miR-1421g-5p mature miRNA
Sequence 22 - AGGGGGUCGUACGUCAUGCAGA - 43
Evidence experimental
Illumina [1]

Mature oan-miR-1421g-2-3p

Accession MIMAT0009176
Description Ornithorhynchus anatinus oan-miR-1421g-2-3p mature miRNA
Sequence 61 - UGCAUGCGUGCGACCUCCUU - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004