Stem-loop sequence oan-mir-1421i-3

Accession MI0007008
Description Ornithorhynchus anatinus miR-1421i-3 stem-loop
Gene family MIPF0000564; mir-1421
Stem-loop 
    --     c     -  cc     agu   gg 
guga  ggagg cguau cu  ugcgg   gau  u
||||  ||||| ||||| ||  |||||   |||   
cacu  ccucc gcaug ga  gcgcc   cua  g
    cc     a     u  -a     -gu   ag
Get sequence
Genome context
Coordinates (OANA5) Overlapping transcripts
Contig7160: 14496-14562 [-]
intergenic
Clustered miRNAs
< 10kb from oan-mir-1421i-3
oan-mir-1421am Contig7160: 23160-23223 [-]
oan-mir-1421al Contig7160: 22579-22691 [-]
oan-mir-1421u Contig7160: 21999-22110 [-]
oan-mir-1421n-2 Contig7160: 19257-19349 [-]
oan-mir-1421t Contig7160: 17958-18074 [-]
oan-mir-1421s Contig7160: 17153-17253 [-]
oan-mir-1421p-2 Contig7160: 16442-16565 [-]
oan-mir-1421ak Contig7160: 15306-15387 [-]
oan-mir-1421i-3 Contig7160: 14496-14562 [-]
oan-mir-1421r Contig7160: 13915-14033 [-]
oan-mir-1421q Contig7160: 13103-13216 [-]
oan-mir-1421p-1 Contig7160: 12428-12492 [-]
oan-mir-1421i-2 Contig7160: 11366-11432 [-]
oan-mir-1421o Contig7160: 10811-10906 [-]
oan-mir-1421g-3 Contig7160: 10086-10153 [-]
oan-mir-1421k-2 Contig7160: 9501-9619 [-]
oan-mir-1421l-2 Contig7160: 8702-8788 [-]
oan-mir-1421n-1 Contig7160: 7381-7494 [-]
oan-mir-1421m Contig7160: 5522-5642 [-]
oan-mir-1419a Contig7160: 5129-5224 [-]
Database links

Mature sequence oan-miR-1421i-5p

Accession MIMAT0006979
Previous IDs oan-miR-1421i
Sequence

4 -  

aggaggccguaucuccugcgg

 - 24

Get sequence
Evidence experimental; Solexa [1]

Mature sequence oan-miR-1421i-3-3p

Accession MIMAT0009178
Previous IDs oan-miR-1421i-3*
Sequence

40 -  

ugccgcgaaguguacgaccucc

 - 61

Get sequence
Evidence experimental; Solexa [1]

References

1
PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).