Stem-loop sequence oan-mir-1421k-2

Accession

MI0007009

Description

Ornithorhynchus anatinus miR-1421k-2 stem-loop

Gene family

MIPF0000564; mir-1421

Stem-loop

gga   c   --u  cc              aa        c             ggua 
   ucc ggc   ga  uacggcauggugug  cagguuac uguggugcagugu    g
   ||| |||   ||  ||||||||||||||  |||||||| |||||||||||||    u
   agg cug   cu  gugccgugccacac  guccagug gcacuacgucgca    g
uag   u   ucu  cu              cc        u             aaag 

Genome context

• Coordinates (OANA5): Contig7160: 9501-9619 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from oan-mir-1421k-2

• oan-mir-1421n-2: Contig7160: 19257-19349 [-]
• oan-mir-1421t: Contig7160: 17958-18074 [-]
• oan-mir-1421s: Contig7160: 17153-17253 [-]
• oan-mir-1421p-2: Contig7160: 16442-16565 [-]
• oan-mir-1421ak: Contig7160: 15306-15387 [-]
• oan-mir-1421i-3: Contig7160: 14496-14562 [-]
• oan-mir-1421r: Contig7160: 13915-14033 [-]
• oan-mir-1421q: Contig7160: 13103-13216 [-]
• oan-mir-1421p-1: Contig7160: 12428-12492 [-]
• oan-mir-1421i-2: Contig7160: 11366-11432 [-]
• oan-mir-1421o: Contig7160: 10811-10906 [-]
• oan-mir-1421g-3: Contig7160: 10086-10153 [-]
• oan-mir-1421k-2: Contig7160: 9501-9619 [-]
• oan-mir-1421l-2: Contig7160: 8702-8788 [-]
• oan-mir-1421n-1: Contig7160: 7381-7494 [-]
• oan-mir-1421m: Contig7160: 5522-5642 [-]
• oan-mir-1419a: Contig7160: 5129-5224 [-]
• oan-mir-1421g-2: Contig7160: 3551-3650 [-]
• oan-mir-1421k-3: Contig7160: 2982-3100 [-]
• oan-mir-1421l-1: Contig7160: 1639-1731 [-]
• oan-mir-1421k-1: Contig7160: 751-869 [-]

Database links

• ENTREZGENE: 100314604;MIR1421K-2

Mature sequence oan-miR-1421k-5p

• Accession: MIMAT0007066
• Previous IDs: oan-miR-1421k
• Sequence: 30 - aacagguuaccuguggugcagu - 51
• Evidence: experimental; Solexa [1]

Mature sequence oan-miR-1421k-2-3p

• Accession: MIMAT0009179
• Previous IDs: oan-miR-1421k-2*
• Sequence: 69 - ugcaucacgugugaccugccc - 89
• Evidence: experimental; Solexa [1]

References

1. PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).