Stem-loop sequence oan-mir-1421k-3

Accession MI0007010
Description Ornithorhynchus anatinus miR-1421k-3 stem-loop
Gene family MIPF0000564; mir-1421
Stem-loop 
    -    - --u  cc           a  aa        c             ggua 
gauc ccgg c   ga  uacggcauggu ug  cagguuac uguggugcagugu    g
|||| |||| |   ||  ||||||||||| ||  |||||||| |||||||||||||    u
uuag gguc g   cu  gugccgugcca ac  guccagug gcacuacgucgca    g
    a    u ucu  cu           c  cc        u             aaag
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Genome context
Coordinates (OANA5) Overlapping transcripts
Contig7160: 2982-3100 [-]
intergenic
Clustered miRNAs
< 10kb from oan-mir-1421k-3
oan-mir-1421p-1 Contig7160: 12428-12492 [-]
oan-mir-1421i-2 Contig7160: 11366-11432 [-]
oan-mir-1421o Contig7160: 10811-10906 [-]
oan-mir-1421g-3 Contig7160: 10086-10153 [-]
oan-mir-1421k-2 Contig7160: 9501-9619 [-]
oan-mir-1421l-2 Contig7160: 8702-8788 [-]
oan-mir-1421n-1 Contig7160: 7381-7494 [-]
oan-mir-1421m Contig7160: 5522-5642 [-]
oan-mir-1419a Contig7160: 5129-5224 [-]
oan-mir-1421g-2 Contig7160: 3551-3650 [-]
oan-mir-1421k-3 Contig7160: 2982-3100 [-]
oan-mir-1421l-1 Contig7160: 1639-1731 [-]
oan-mir-1421k-1 Contig7160: 751-869 [-]
Database links

Mature sequence oan-miR-1421k-5p

Accession MIMAT0007066
Previous IDs oan-miR-1421k
Sequence

29 -  

aacagguuaccuguggugcagu

 - 50

Get sequence
Evidence experimental; Solexa [1]

Mature sequence oan-miR-1421k-3-3p

Accession MIMAT0009180
Previous IDs oan-miR-1421k-3*
Sequence

68 -  

ugcaucacgugugaccugccc

 - 88

Get sequence
Evidence experimental; Solexa [1]

References

1
PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).