miRBase entry: oan-mir-1421k-3

Stem-loop oan-mir-1421k-3


Accession
MI0007010
Description
Ornithorhynchus anatinus oan-mir-1421k-3 precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

310 reads, 319 reads per million, 4 experiments
gaucccggcugaccuacggcaugguaugAACAGGUUACCUGUGGUGCAGUgugguaguggaaaacgcUGCAUCACGUGUGACCUGCCCacaccgugccgugucucucugucuggagauu
(((((((((.((..(((((((((((.((..((((((((.(((((((((((((...........))))))))))))).))))))))..)).)))))))))))....)).).)))).))))

Structure
    -    - u  --cc           a  AA        C             ggua 
gauc ccgg c ga    uacggcauggu ug  CAGGUUAC UGUGGUGCAGUgu    g
|||| |||| | ||    ||||||||||| ||  |||||||| |||||||||||||    u
uuag gguc g cu    gugccgugcca aC  GUCCAGUG GCACUACGUcgca    g
    a    u u  cucu           c  CC        U             aaag 


Annotation confidence Not enough data
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Genome context
Contig7160: 2982-3100 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from oan-mir-1421k-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421k-5p

Accession MIMAT0007066
Description Ornithorhynchus anatinus oan-miR-1421k-5p mature miRNA
Sequence 29 - AACAGGUUACCUGUGGUGCAGU - 50
Evidence experimental
Illumina [1]

Mature oan-miR-1421k-3p

Accession MIMAT0009179
Description Ornithorhynchus anatinus oan-miR-1421k-3p mature miRNA
Sequence 68 - UGCAUCACGUGUGACCUGCCC - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004