Stem-loop sequence oan-mir-1421l-2

Accession MI0007011
Description Ornithorhynchus anatinus miR-1421l-2 stem-loop
Gene family MIPF0000564; mir-1421
Stem-loop 
   u    g     a  ug     u  a u       gg  ag 
uac gcac gugug ag  gucac ug g ugcagug  gu  u
||| |||| ||||| ||  ||||| || | |||||||  ||   
gug cgug cacau uc  cagug ac c acgucgu  ca  g
   c    a     c  gu     u  c u       -a  ag
Get sequence
Genome context
Coordinates (OANA5) Overlapping transcripts
Contig7160: 8702-8788 [-]
intergenic
Clustered miRNAs
< 10kb from oan-mir-1421l-2
oan-mir-1421t Contig7160: 17958-18074 [-]
oan-mir-1421s Contig7160: 17153-17253 [-]
oan-mir-1421p-2 Contig7160: 16442-16565 [-]
oan-mir-1421ak Contig7160: 15306-15387 [-]
oan-mir-1421i-3 Contig7160: 14496-14562 [-]
oan-mir-1421r Contig7160: 13915-14033 [-]
oan-mir-1421q Contig7160: 13103-13216 [-]
oan-mir-1421p-1 Contig7160: 12428-12492 [-]
oan-mir-1421i-2 Contig7160: 11366-11432 [-]
oan-mir-1421o Contig7160: 10811-10906 [-]
oan-mir-1421g-3 Contig7160: 10086-10153 [-]
oan-mir-1421k-2 Contig7160: 9501-9619 [-]
oan-mir-1421l-2 Contig7160: 8702-8788 [-]
oan-mir-1421n-1 Contig7160: 7381-7494 [-]
oan-mir-1421m Contig7160: 5522-5642 [-]
oan-mir-1419a Contig7160: 5129-5224 [-]
oan-mir-1421g-2 Contig7160: 3551-3650 [-]
oan-mir-1421k-3 Contig7160: 2982-3100 [-]
oan-mir-1421l-1 Contig7160: 1639-1731 [-]
oan-mir-1421k-1 Contig7160: 751-869 [-]
Database links

Mature sequence oan-miR-1421l-5p

Accession MIMAT0007068
Previous IDs oan-miR-1421l
Sequence

15 -  

aaguggucacuugaguugcagu

 - 36

Get sequence
Evidence experimental; Solexa [1]

Mature sequence oan-miR-1421l-2-3p

Accession MIMAT0009181
Previous IDs oan-miR-1421l-2*
Sequence

54 -  

ugcaucccaugugacugcucu

 - 74

Get sequence
Evidence experimental; Solexa [1]

References

1
PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).