Stem-loop oan-mir-1421p-2

Accession

MI0007012

Description

Ornithorhynchus anatinus oan-mir-1421p-2 precursor miRNA

Gene family

MIPF0000564; mir-1421

Sequence

893 reads, 811 reads per million, 2 experiments

ggggccccaggugaccuacggcacggugugAGGGGGCCGUACCUCAUGCAGAguguugguggaauuugugugcggcUGCAUAGUGUGCGGCCUCCCCAcacagugcuggguuuuucuagccaga
..(((...(((.((((..((((((.(((((.(((((((((((((.((((((..(((...............))).)))))))).))))))))))).))))).))))))))))..))).)))...

Structure

-gg   ccc   -u    ua      g     A           -  C      Ag   uggugg 
   ggc   agg  gacc  cggcac gugug GGGGGCCGUAC CU AUGCAG  ugu      a
   |||   |||  ||||  |||||| ||||| ||||||||||| || ||||||  |||      a
   ccg   ucu  uugg  gucgug cacAC CCUCCGGCGUG GA UACGUc  gcg      u
aga   --a   uu    --      a     C           U  -      -g   uguguu 

Annotation confidence Not enough data

Genome context

Contig7160: 16442-16565 [-]

Clustered miRNAs

17 other miRNAs are < 10 kb from oan-mir-1421p-2

Mature oan-miR-1421p-5p

• Accession: MIMAT0007078
• Description: Ornithorhynchus anatinus oan-miR-1421p-5p mature miRNA
• Sequence: 31 - AGGGGGCCGUACCUCAUGCAGA - 52
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1421p-3p

• Accession: MIMAT0007079
• Description: Ornithorhynchus anatinus oan-miR-1421p-3p mature miRNA
• Sequence: 77 - UGCAUAGUGUGCGGCCUCCCCA - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004