Stem-loop sequence oan-mir-1421al

Accession MI0007014
Description Ornithorhynchus anatinus miR-1421al stem-loop
Gene family MIPF0000564; mir-1421
Stem-loop 
aggaucc   cu  cc     ca       aac              a       aua 
       cag  ga  uaugg  cggugug   agguuacauguggu cagcaug   g
       |||  ||  |||||  |||||||   |||||||||||||| |||||||   u
       guc  cu  guguc  gucacac   uccaaugugcacua gucguau   g
-----cu   -u  cu     ac       ccc              c       aag
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Genome context
Coordinates (OANA5) Overlapping transcripts
Contig7160: 22579-22691 [-]
intergenic
Clustered miRNAs
< 10kb from oan-mir-1421al
oan-mir-1421am Contig7160: 23160-23223 [-]
oan-mir-1421al Contig7160: 22579-22691 [-]
oan-mir-1421u Contig7160: 21999-22110 [-]
oan-mir-1421n-2 Contig7160: 19257-19349 [-]
oan-mir-1421t Contig7160: 17958-18074 [-]
oan-mir-1421s Contig7160: 17153-17253 [-]
oan-mir-1421p-2 Contig7160: 16442-16565 [-]
oan-mir-1421ak Contig7160: 15306-15387 [-]
oan-mir-1421i-3 Contig7160: 14496-14562 [-]
oan-mir-1421r Contig7160: 13915-14033 [-]
oan-mir-1421q Contig7160: 13103-13216 [-]
Database links

Mature sequence oan-miR-1421al-5p

Accession MIMAT0007311
Previous IDs oan-miR-1421al
Sequence

33 -  

cagguuacaugugguacagcau

 - 54

Get sequence
Evidence experimental; Solexa [1]

Mature sequence oan-miR-1421al-3p

Accession MIMAT0007312
Previous IDs oan-miR-1421al*
Sequence

67 -  

ugcugcaucacguguaaccuc

 - 87

Get sequence
Evidence experimental; Solexa [1]

References

1
PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).