miRBase entry: oan-mir-1422p

Stem-loop oan-mir-1422p


Accession
MI0007016
Description
Ornithorhynchus anatinus oan-mir-1422p precursor miRNA
Gene family
MIPF0000565; mir-1422


Sequence

27 reads, 37 reads per million, 2 experiments
uuggagugaccauccugauucuggauUCAGUCAAGAAAGUAUUUUCUuuacauacaguuaaucuggAAAAUGGUGUCUUGAUUGAUUccagggucagagcauauacucagcacu
...(((((......(((((((((((.((((((((((.(.((((((((.................)))))))).).)))))))))).)))))))))))......)))))......

Structure
---uug     accauc           u          A G        uuacaua 
      gagug      cugauucugga UCAGUCAAGA A UAUUUUCU       c
      |||||      ||||||||||| |||||||||| | ||||||||       a
      cucau      gacugggaccU AGUUAGUUCU U GUAAAAgg       g
ucacga     auacga           U          G G        ucuaauu 


Annotation confidence Not enough data
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Genome context
Contig8388: 555-668 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from oan-mir-1422p
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1422p-5p

Accession MIMAT0007314
Description Ornithorhynchus anatinus oan-miR-1422p-5p mature miRNA
Sequence 27 - UCAGUCAAGAAAGUAUUUUCU - 47
Evidence experimental
Illumina [1]

Mature oan-miR-1422p-3p

Accession MIMAT0007315
Description Ornithorhynchus anatinus oan-miR-1422p-3p mature miRNA
Sequence 67 - AAAAUGGUGUCUUGAUUGAUU - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004