miRBase entry: oan-mir-1420g

Stem-loop oan-mir-1420g


Accession
MI0007018
Description
Ornithorhynchus anatinus oan-mir-1420g precursor miRNA
Gene family
MIPF0000574; mir-1420


Sequence

10 reads, 7 reads per million, 3 experiments
uugcuuaauccagccuAUCCGGCCUGGGAGCACUCUCUagugauauacauggggAAAUUGCCACCAGGUCAGAUGGguuugguuggcucacugcu
..(((.((((.((((((((.(((((((..(((.(((((((((...))).))))))...)))..))))))).)))))))).)))))))........

Structure
------uu   u    c        C       GA   --C      -   a 
        gcu aauc agccuAUC GGCCUGG  GCA   UCUCUa gug  
        ||| |||| |||||||| |||||||  |||   |||||| ||| u
        cgg uugg uugGGUAG CUGGACC  CGU   Aggggu cau  
ucgucacu   -    u        A       AC   UAA      a   a 


Annotation confidence Not enough data
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Genome context
Contig198872: 189-283 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-1420g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1420g-5p

Accession MIMAT0007318
Description Ornithorhynchus anatinus oan-miR-1420g-5p mature miRNA
Sequence 17 - AUCCGGCCUGGGAGCACUCUCU - 38
Evidence experimental
Illumina [1]

Mature oan-miR-1420g-3p

Accession MIMAT0007319
Description Ornithorhynchus anatinus oan-miR-1420g-3p mature miRNA
Sequence 55 - AAAUUGCCACCAGGUCAGAUGG - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004