Stem-loop ptc-MIR171l

Accession

MI0007032

Description

Populus trichocarpa ptc-MIR171l precursor miRNA

Gene family

MIPF0000104; MIR171_2

Literature search

6 open access papers mention ptc-MIR171l
(11 sentences)

Sequence

ggagaaguagacacggUGUGAUAUUGGUCCGGCUCAUCuucugugcauaagcaucugaaguucuucacucaugaagaCGAGCCGAAUCAAUAUCACUcuuguaugcuucuuc
(((((((((.(((.((.(((((((((((.((((((..((((.((((....))))..)))).((((((....)))))).)))))).))))))))))).))))).)))))))))

Structure

         g   c  U           C      ----------------AU    -u    a 
ggagaagua aca gg GUGAUAUUGGU CGGCUC                  Cuuc  gugc u
||||||||| ||| || ||||||||||| ||||||                  ||||  ||||  
cuucuucgu ugu uc CACUAUAACUA GCCGAG                  gaag  uacg a
         a   -  U           A      Cagaaguacucacuucuu    uc    a 

Annotation confidence Not enough data

Genome context

CM000351.2: 654599-654710 [+]

Mature ptc-miR171l-3p

• Accession: MIMAT0005994
• Description: Populus trichocarpa ptc-miR171l-3p mature miRNA
• Sequence: 78 - CGAGCCGAAUCAAUAUCACU - 97
• Evidence: experimental ; cloned [1]

Mature ptc-miR171l-5p

• Accession: MIMAT0002095
• Description: Populus trichocarpa ptc-miR171l-5p mature miRNA
• Sequence: 17 - UGUGAUAUUGGUCCGGCUCAUC - 38
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151