Stem-loop ptc-MIR530a

Accession

MI0007035

Description

Populus trichocarpa ptc-MIR530a precursor miRNA

Gene family

MIPF0000521; MIR530

Sequence

gccaacauguugccuuuaucUGCAUUUGCACCUGCACCUUacuuguuucuuucuuuuguuuuugacuccaaaaccaaaaguaaguuugaaacauuaaaacaagcuugaggugcaggugcaggugcaggugaaugccauguuggu
(((((((((..((.(((((((((((((((((((((((((((((((((((((.((((((.(((((....))))).)))))).)))............)))))))..))))))))))))))))))))))))))).)))))))))))

Structure

         uu  c                           --       ------------   u      u     a 
gccaacaug  gc uuuaucUGCAUUUGCACCUGCACCUUa  cuuguuu            cuu cuuuug uuuug c
|||||||||  || |||||||||||||||||||||||||||  |||||||            ||| |||||| |||||  
ugguuguac  cg aaguggacguggacguggacguggagu  gaacaaa            gaa gaaaac aaaac u
         --  u                           uc       auuacaaaguuu   u      c     c 

Annotation confidence Not enough data

Genome context

CM000345.2: 1538579-1538722 [-]

Mature ptc-miR530a

• Accession: MIMAT0005997
• Description: Populus trichocarpa ptc-miR530a mature miRNA
• Sequence: 21 - UGCAUUUGCACCUGCACCUU - 40
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151