miRBase entry: ptc-MIR1445

Stem-loop ptc-MIR1445


Accession
MI0007040
Description
Populus trichocarpa ptc-MIR1445 precursor miRNA


Sequence

aagcuaauuaaucugauuucccuaguuuauaaguuguuacaauugaaugaaccuuguuugcaagcauaggauuaguugccgcccaccauaaaUCCCUUGUAGACUAGAAAAAucuaaucugauuugguuu
((((((((((((..(((((..((((((((((((..((..(((((((.....(((((((....)))).))).)))))))..)).............))))))))))))..)))))..)).))).)))))))

Structure
       -   -  cu     cc            -----------uu  ua       augaa   -    u 
aagcuaa uua au  gauuu  cuaguuuauaag             gu  caauuga     ccu uguu g
||||||| ||| ||  |||||  ||||||||||||             ||  |||||||     ||| ||||  
uuugguu agu ua  cuAAA  GAUCAGAUGUUC             cg  guugauu     gga acga c
       u   c  au     AA            CCUaaauaccacc  cc       ----a   u    a 


Annotation confidence Not enough data
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Genome context
CM000348.2: 6339575-6339704 [-]

Database links

Mature ptc-miR1445

Accession MIMAT0006002
Description Populus trichocarpa ptc-miR1445 mature miRNA
Sequence 93 - UCCCUUGUAGACUAGAAAAA - 112
Evidence experimental
cloned [1]

References

  1. PubMed ID: 18363789
    Stress-responsive microRNAs in Populus
    "Lu S, Sun YH, Chiang VL"
    "Plant J (2008) 55:131-151