miRBase entry: ptc-MIR1446c

Stem-loop ptc-MIR1446c


Accession
MI0007044
Description
Populus trichocarpa ptc-MIR1446c precursor miRNA
Gene family
MIPF0000459; MIR1446

Literature search
1 open access papers mention ptc-MIR1446c
(4 sentences)

Sequence

ccaacuuuUUCUGAACUCUCUCCCUCAAcugcuauucuagagcuuccugagcuaacccuuguguuucuguguagcagucaaggugggaggcucagaaaauguugg
(((((.((((((((.(.((((((((..((((((((..((((((((...)))).............)))).))))))))..))).)))))).)))))))).)))))

Structure
     u        A U     -   CA        uc    -------------    c 
ccaac uuUUCUGA C CUCUC CCU  Acugcuau  uaga             gcuu  
||||| |||||||| | ||||| |||  ||||||||  ||||             |||| c
gguug aaaagacu g gaggg gga  ugacgaug  gucu             cgag  
     u        c -     u   ac        -u    uuguguucccaau    u 


Annotation confidence Not enough data
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Genome context
CM000348.2: 11790900-11791004 [+]

Database links

Mature ptc-miR1446c

Accession MIMAT0006006
Description Populus trichocarpa ptc-miR1446c mature miRNA
Sequence 9 - UUCUGAACUCUCUCCCUCAA - 28
Evidence experimental
cloned [1]

References

  1. PubMed ID: 18363789
    Stress-responsive microRNAs in Populus
    "Lu S, Sun YH, Chiang VL"
    "Plant J (2008) 55:131-151