miRBase entry: ptc-MIR1446d

Stem-loop ptc-MIR1446d


Accession
MI0007045
Description
Populus trichocarpa ptc-MIR1446d precursor miRNA
Gene family
MIPF0000459; MIR1446

Literature search
1 open access papers mention ptc-MIR1446d
(4 sentences)

Sequence

ccaacuucUUCUGAACUCUCUCCCUCAAcugcuacucuagaucuugccaaucccugucaaguguuucuguguagcagucgaggugagagguucaggaaauguugg
(((((...((((((((.(((((((((.((((((((.(.((((((((.((.....)).)))).))))..).)))))))).)))).)))))))))))))...)))))

Structure
     uuc        U     -    A        u -u    -    c  a 
ccaac   UUCUGAAC CUCUC CCUC Acugcuac c  agau cuug ca u
|||||   |||||||| ||||| |||| |||||||| |  |||| |||| || c
gguug   aggacuug gagag ggag ugacgaug g  uuug gaac gu c
     uaa        -     u    c        u uc    u    u  c 


Annotation confidence Not enough data
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Genome context
CM000351.2: 12329283-12329387 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptc-MIR1446d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR1446d

Accession MIMAT0006007
Description Populus trichocarpa ptc-miR1446d mature miRNA
Sequence 9 - UUCUGAACUCUCUCCCUCAA - 28
Evidence experimental
cloned [1]

References

  1. PubMed ID: 18363789
    Stress-responsive microRNAs in Populus
    "Lu S, Sun YH, Chiang VL"
    "Plant J (2008) 55:131-151