miRBase entry: odi-mir-1487

Stem-loop odi-mir-1487


Accession
MI0007098
Description
Oikopleura dioica odi-mir-1487 precursor miRNA


Sequence

acacgagcgccagacUGGCAGUGGGGACAAGUUUAGGcccugaggcggauugaaaaaugccccaaggccugggcccacuucuugacuggccccgugacaaac
.((((.(.(((((.(.((.((((((......((((((((.((.((((..........)))).)).)))))))))))))).)).).)))))).))))......

Structure
-----a    a c     a U  C      GACAAG        c  a    gauu 
      cacg g gccag c GG AGUGGG      UUUAGGcc ug ggcg    g
      |||| | ||||| | || ||||||      |||||||| || ||||     
      gugc c cgguc g uc ucaccc      ggguccgg ac ccgu    a
caaaca    c -     a u  u      ------        a  c    aaaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature odi-miR-1487

Accession MIMAT0006040
Description Oikopleura dioica odi-miR-1487 mature miRNA
Sequence 16 - UGGCAGUGGGGACAAGUUUAGG - 37
Evidence experimental
cloned [1]

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080