miRBase entry: odi-mir-1493-2

Stem-loop odi-mir-1493-2


Accession
MI0007106
Description
Oikopleura dioica odi-mir-1493-2 precursor miRNA


Sequence

uugagaucaaggaugAGAACUGUCUGAAUGGUUGGCagucggaaauuuuaauuuauaccgacgccagcuaugcacacaguuuaaauucgagaucuaccac
...(((((..((((..(((((((.((.(((((((((.(((((...............)))))))))))))).)).)))))))..))))..))))).....

Structure
--uug     aa    gA       C  A         a     aaauuu 
     agauc  ggau  GAACUGU UG AUGGUUGGC gucgg      u
     |||||  ||||  ||||||| || ||||||||| |||||      a
     ucuag  cuua  uuugaca ac uaucgaccg cagcc      a
cacca     ag    aa       c  g         -     auauuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature odi-miR-1493

Accession MIMAT0006046
Description Oikopleura dioica odi-miR-1493 mature miRNA
Sequence 16 - AGAACUGUCUGAAUGGUUGGC - 36
Evidence experimental
cloned [1]

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080