miRBase entry: odi-mir-1500

Stem-loop odi-mir-1500


Accession
MI0007122
Description
Oikopleura dioica odi-mir-1500 precursor miRNA


Sequence

aucuucauugcauuauuuuuaaucaacugcgugaucuuauucaagucuuuggaauaauuugaaacUUGAUAAGACUGUCAUUGAUGAaaauuuauguaaccu
.......((((((.(((((((.((((..(((.(.((((((.(((((.((((((....)))))))))))))))))))))..)))))))))))..))))))...

Structure
aucuuca      -u       a    cu   u a      u     c      a 
       uugcau  auuuuua ucaa  gcg g ucuuau caagu uuugga u
       ||||||  ||||||| ||||  ||| | |||||| ||||| ||||||  
       aaugua  uaaaAGU AGUU  UGU C AGAAUA GUUca aaguuu a
----ucc      uu       -    AC   - -      -     -      a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature odi-miR-1500

Accession MIMAT0006060
Description Oikopleura dioica odi-miR-1500 mature miRNA
Sequence 66 - UUGAUAAGACUGUCAUUGAUGA - 87
Evidence experimental
cloned [1]

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080