miRBase entry: csa-mir-1473

Stem-loop csa-mir-1473


Accession
MI0007131
Description
Ciona savignyi csa-mir-1473 precursor miRNA
Gene family
MIPF0000504; mir-1473


Sequence

cgaaacaucauuaaauaaccuacgugggucuggcucccaaaucuucgaucuugugagauauauucUCAAGCUCGGUUUUAUGGGUGCcgcauccaacgaca
......................(((((((.((((.((((.....((((.((..(((((.....))))))).)))).....)))).)))).)))).)))...

Structure
cgaaacaucauuaaauaaccua   -    c    u    aaucu    u  ug     u 
                      cgu gggu uggc ccca     ucga cu  ugaga a
                      ||| |||| |||| ||||     |||| ||  ||||| u
                      gca ccua gcCG GGGU     GGCU GA  ACUcu a
-------------------aca   a    c    U    AUUUU    C  --     u 


Annotation confidence Not enough data
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Genome context
reftig_44: 256366-256466 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from csa-mir-1473
Name Accession Chromosome Start End Strand Confidence




Database links

Mature csa-miR-1473

Accession MIMAT0006069
Description Ciona savignyi csa-miR-1473 mature miRNA
Sequence 66 - UCAAGCUCGGUUUUAUGGGUGC - 87
Evidence not_experimental

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080