Stem-loop cin-let-7d

Accession

MI0007153

Description

Ciona intestinalis cin-let-7d precursor miRNA

Literature search

3 open access papers mention cin-let-7d
(18 sentences)

Sequence

1064 reads, 406 reads per million, 2 experiments

ucagcuauucguggcUGAGGUAGUUGGUUGUAUUGUUucccuuguguaauguuaaCUAUACAGCCCGCUAGCUUaaccaugguugcuaacuauccacgaau
..(((...((((((.((((.((((.((((((((.(((................))).)))))))).)))).)))).))))))..)))..............

Structure

------------uc   uau      c    G    U        U   ucccuug 
              agc   ucgugg UGAG UAGU GGUUGUAU GUU       u
              |||   |||||| |||| |||| |||||||| |||        
              ucg   gguacc aUUC AUCG CCGACAUA Caa       g
uaagcaccuaucaa   -uu      a    G    C        U   uuguaau 

Annotation confidence Low

Genome context

10p: 1217625-1217725 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cin-let-7d

Mature cin-let-7d-5p

• Accession: MIMAT0006089
• Description: Ciona intestinalis cin-let-7d-5p mature miRNA
• Sequence: 16 - UGAGGUAGUUGGUUGUAUUGUU - 37
• Evidence: experimental ; Northern [1], Illumina [3]

Mature cin-let-7d-3p

• Accession: MIMAT0015250
• Description: Ciona intestinalis cin-let-7d-3p mature miRNA
• Sequence: 56 - CUAUACAGCCCGCUAGCUU - 74
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39


3. PubMed ID: 18047675
   Computational prediction and experimental validation of Ciona intestinalis microRNA genes
   Norden-Krichmar TM, Holtz J, Pasquinelli AE, Gaasterland T
   BMC Genomics (2007) 8:445