Stem-loop cin-mir-31

Accession

MI0007156

Description

Ciona intestinalis cin-mir-31 precursor miRNA

Gene family

MIPF0000064; mir-31

Sequence

343 reads, 148 reads per million, 2 experiments

auguaacugguucuaUGGCAAGAUGUUGGCAUAGCUAuuucacaugaugugauauagugugcuaauaucuagcuuugguacuagcuuaagaaaucaacgcaa
......(((((.(((.(((.(((((((((((((.((((.(((((...))))).))))))))))))))))).))).))).)))))..................

Structure

------------auguaa     u   U   A             G    u     u 
                  cuggu cua GGC AGAUGUUGGCAUA CUAu ucaca  
                  ||||| ||| ||| ||||||||||||| |||| ||||| g
                  gauca ggu ucg ucuauaaucgugu gaua agugu  
aacgcaacuaaagaauuc     u   u   a             -    u     a 

Annotation confidence Not enough data

Genome context

5q: 2076043-2076144 [+]

Mature cin-miR-31

• Accession: MIMAT0006092
• Description: Ciona intestinalis cin-miR-31 mature miRNA
• Sequence: 16 - UGGCAAGAUGUUGGCAUAGCUA - 37
• Evidence: experimental ; Northern [1], Illumina [3]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39


3. PubMed ID: 18047675
   Computational prediction and experimental validation of Ciona intestinalis microRNA genes
   Norden-Krichmar TM, Holtz J, Pasquinelli AE, Gaasterland T
   BMC Genomics (2007) 8:445