Stem-loop cin-mir-33

Accession

MI0007157

Description

Ciona intestinalis cin-mir-33 precursor miRNA

Gene family

MIPF0000070; mir-33

Literature search

1 open access papers mention cin-mir-33
(2 sentences)

Sequence

67 reads, 24 reads per million, 2 experiments

ugguaguuuucccuuGUGCAUUGUAGUUGCAUUGcacuguugcauuguggguaaugugacaacaauacaaccgggauuucugcacagucaucauaaauuug
((((((...((((...((.(((((.((((((((((.(((........))))))))))))).))))).))...))))...)))).))...............

Structure

---------------  -    uuu    uuG  C     A          a   uug 
               ug guag   uccc   UG AUUGU GUUGCAUUGc cug   c
               || ||||   ||||   || ||||| |||||||||| |||    
               ac cguc   aggg   ac uaaca caguguaaug ggu   a
guuuaaauacuacug  a    uuu    cca  a     a          -   guu 

Annotation confidence Not enough data

Genome context

Unknown

Mature cin-miR-33

• Accession: MIMAT0006093
• Description: Ciona intestinalis cin-miR-33 mature miRNA
• Sequence: 16 - GUGCAUUGUAGUUGCAUUG - 34
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39