miRBase entry: cin-mir-101

Stem-loop cin-mir-101


Accession
MI0007163
Description
Ciona intestinalis cin-mir-101 precursor miRNA


Sequence

uugaaccauuuuuucuuacagauuggugacgcugacugauauaugugagaaaagugaacauauggUACAGUACUGUGAUAAAUAUUUgacaggaagaaaagg
.....((.(((((((((.(((((......(((.(((((.(((((((...........)))))))...)))).).)))......)))))..))))))))).))

Structure
uugaa  a         -a     ugguga   u -    --a       gaga 
     cc uuuuuucuu  cagau      cgc g acug   uauaugu    a
     || |||||||||  |||||      ||| | ||||   |||||||    a
     gg aaagaagga  gUUUA      GUG C UGAC   guauaca    a
-----  a         ca     UAAAUA   U A    AUg       agug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cin-miR-101

Accession MIMAT0006099
Description Ciona intestinalis cin-miR-101 mature miRNA
Sequence 66 - UACAGUACUGUGAUAAAUAUUU - 87
Evidence not_experimental

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080