Stem-loop cin-mir-124-1

Accession

MI0007164

Description

Ciona intestinalis cin-mir-124-1 precursor miRNA

Gene family

MIPF0000021; mir-124

Literature search

3 open access papers mention cin-mir-124-1
(44 sentences)

Sequence

73403 reads, 31455 reads per million, 2 experiments

uauguucgguAGUAUUUAUUGUGGACCUUGcugugugacgucacaaUAAGGCACGCGGUGAAUGCCAAcgaauuuuu
...(((((...((((((((((((..(((((.((((......)))).)))))..))))))))))))...)))))....

Structure

-uau     guA            GA     c    ug 
    guucg   GUAUUUAUUGUG  CCUUG ugug  a
    |||||   ||||||||||||  ||||| ||||   
    uaagc   CGUAAGUGGCGC  GGAAU acac  c
uuuu     AAC            AC     a    ug 

Annotation confidence High

Genome context

7q: 6301475-6301551 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cin-mir-124-1

Mature cin-miR-124-1-5p

• Accession: MIMAT0015256
• Description: Ciona intestinalis cin-miR-124-1-5p mature miRNA
• Sequence: 11 - AGUAUUUAUUGUGGACCUUG - 30
• Evidence: experimental ; Illumina [2]

Mature cin-miR-124-3p

• Accession: MIMAT0006100
• Description: Ciona intestinalis cin-miR-124-3p mature miRNA
• Sequence: 47 - UAAGGCACGCGGUGAAUGCCAA - 68
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39