miRBase entry: cin-mir-216

Stem-loop cin-mir-216


Accession
MI0007176
Description
Ciona intestinalis cin-mir-216 precursor miRNA
Gene family
MIPF0000054; mir-216


Sequence

816 reads, 319 reads per million, 2 experiments
uuacucgagccugcuUAAUCUCAGCUGGCAAUCUGUGAugucauaaucaucacggggcaagaugggauuuugcugacuaaggguuuaacgacucagcguauuau
..((((.((.(.((..(((((((.((.((..(((((((((.......))))))))))).)).)))))))..)).).))..))))...(((......))).....

Structure
------------------uu    -g  c u  uU       G  G  AA         uc 
                    acuc  ag c gc  AAUCUCA CU GC  UCUGUGAug  a
                    ||||  || | ||  ||||||| || ||  |||||||||  u
                    uggg  uc g cg  uuagggu ga cg  gggcacuac  a
uauuaugcgacucagcaauu    aa  a u  uu       a  a  --         ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cin-miR-216

Accession MIMAT0006111
Description Ciona intestinalis cin-miR-216 mature miRNA
Sequence 16 - UAAUCUCAGCUGGCAAUCUGUGA - 38
Evidence not_experimental

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080