miRBase entry: csa-let-7a

Stem-loop csa-let-7a


Accession
MI0007181
Description
Ciona savignyi csa-let-7a precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
2 open access papers mention csa-let-7a
(14 sentences)

Sequence

caaagccgcucaaaaUGAGGUAGUAGGUUAUAUCAGUugaauauuuuaccauggugauaacuguauaaccaacuagcuuucuuaaacgguuuacuaucagca
..((((((........(((.((((.(((((((.((((((......((((....))))))))))))))))).)))).))).......))))))..........

Structure
--------ca      cucaaaaU   G    A       U      aauauu    c 
          aagccg        GAG UAGU GGUUAUA CAGUug      uuac a
          ||||||        ||| |||| ||||||| ||||||      ||||  
          uuuggc        uuc auca ccaauau gucaau      agug u
acgacuauca      -aaauucu   g    a       -      ------    g 


Annotation confidence Not enough data
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Genome context
reftig_41: 1116068-1116169 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from csa-let-7a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature csa-let-7a

Accession MIMAT0006116
Description Ciona savignyi csa-let-7a mature miRNA
Sequence 16 - UGAGGUAGUAGGUUAUAUCAGU - 37
Evidence not_experimental

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080