Stem-loop sequence csa-let-7b

AccessionMI0007182 (change log)
DescriptionCiona savignyi let-7b stem-loop
Gene family MIPF0000002; let-7
Literature search

2 open access papers mention csa-let-7b
(14 sentences)

Stem-loop
   ---ua        g    u     -               ------  c   aau 
5'      guagucuu uugu gaggu aguagguuauguugu      ug gug   u
        |||||||| |||| ||||| |||||||||||||||      || |||    
3'      caucggga gacg cucua ucauucaguacaaca      ac cac   a
   aucga        a    u     c               uagagg  a   aac 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (CSAV2.0) Overlapping transcripts
reftig_41: 1115604-1115705 [+]
intergenic
Clustered miRNAs
< 10kb from csa-let-7b
csa-let-7c-1reftig_41: 1114139-1114239 [+]
csa-let-7breftig_41: 1115604-1115705 [+]
csa-let-7areftig_41: 1116068-1116169 [+]
csa-let-7c-2reftig_41: 1117496-1117597 [+]
Database links

Mature sequence csa-let-7b

Accession MIMAT0006117
Sequence

16 - 

ugagguaguagguuauguuguu

 - 37

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Evidence by similarity; MI0004968

References

1
PMID:18339653 "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica" Fu X, Adamski M, Thompson EM Mol Biol Evol. 25:1067-1080(2008).