miRBase entry: csa-mir-7

Stem-loop csa-mir-7


Accession
MI0007186
Description
Ciona savignyi csa-mir-7 precursor miRNA
Gene family
MIPF0000022; mir-7

Literature search
1 open access papers mention csa-mir-7
(4 sentences)

Sequence

ccguccucuaccacgUGGAAGACUAGUGAUUUUGUUGUuucaucaacaacaaucuuuagucuacugcacgguugauggaugcuaucaucauuucuuauuuuug
.(((((((.(((..((((.(((((((.((((((((((......)))))).)))).))))))).))))..))).)).)))))......................

Structure
---------------------c     -  u   ac    A       U    -      Uu 
                      cgucc uc acc  gUGG AGACUAG GAUU UUGUUG  u
                      ||||| || |||  |||| ||||||| |||| ||||||   
                      guagg ag ugg  cguc ucugauu cuaa aacaac  c
guuuuuauucuuuacuacuauc     u  u   ca    a       u    c      ua 


Annotation confidence Not enough data
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Genome context
reftig_30: 3091327-3091429 [+]

Database links

Mature csa-miR-7

Accession MIMAT0006120
Description Ciona savignyi csa-miR-7 mature miRNA
Sequence 16 - UGGAAGACUAGUGAUUUUGUUGU - 38
Evidence not_experimental

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080