miRBase entry: csa-mir-31

Stem-loop csa-mir-31


Accession
MI0007187
Description
Ciona savignyi csa-mir-31 precursor miRNA
Gene family
MIPF0000064; mir-31


Sequence

augugacuagcacuaUGGCAAGAUGUUGGCAUAGCUauaaaaauguuaaacauagugugcuaaugucuagccuuggcgcuag
......(((((.(((.(((.(((((((((((((.((((.............))))))))))))))))).))).))).)))))

Structure
auguga     a   U   A             G    aaaaa 
      cuagc cua GGC AGAUGUUGGCAUA CUau     u
      ||||| ||| ||| ||||||||||||| ||||     g
      gaucg ggu ccg ucuguaaucgugu gaua     u
------     c   u   a             -    caaau 


Annotation confidence Not enough data
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Genome context
reftig_48: 895318-895399 [-]

Database links

Mature csa-miR-31

Accession MIMAT0006121
Description Ciona savignyi csa-miR-31 mature miRNA
Sequence 16 - UGGCAAGAUGUUGGCAUAGCU - 36
Evidence not_experimental

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080