miRBase entry: csa-mir-34

Stem-loop csa-mir-34


Accession
MI0007188
Description
Ciona savignyi csa-mir-34 precursor miRNA
Gene family
MIPF0000039; mir-34


Sequence

auucacgugauucugAGGCAGUGUAGUUAGCUAGUUGuuuucuuauccggguggguuuguaccccacaucgguuuucauauaaacaacuacuuuuugcacua
...................(((((((..((.(((((((((......(((((((((.......))))).)))).........)))))))))))..))))))).

Structure
auucacgugauucugAGGC       UU  C         ---ucuuau    -     uu 
                   AGUGUAG  AG UAGUUGuuu         ccgg guggg  u
                   |||||||  || |||||||||         |||| |||||  g
                   ucacguu  uc aucaacaaa         ggcu caccc  u
------------------a       uu  -         uauacuuuu    a     ca 


Annotation confidence Not enough data
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Genome context
reftig_0: 1439035-1439136 [+]

Database links

Mature csa-miR-34

Accession MIMAT0006122
Description Ciona savignyi csa-miR-34 mature miRNA
Sequence 16 - AGGCAGUGUAGUUAGCUAGUUG - 37
Evidence not_experimental

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080