Stem-loop csa-mir-92a

Accession

MI0007189

Description

Ciona savignyi csa-mir-92a precursor miRNA

Gene family

MIPF0000509; mir-92

Sequence

aucauaaccacaacuauguaucaauaugccuagaccagacaaaguguauugcguuguugcaaucgUAUUGCACUUGUCCCGGUCUAagcauuugguaagaaag
..((((........))))((((((.((((.((((((.(((((.(((((.(((((((...))).)))).))))))))))..)))))).))))))))))......

Structure

aucauaaccacaacuaug      u    c      -a     a     u    -   u 
                  uaucaa augc uagacc  gacaa gugua ugcg uug  
                  |||||| |||| ||||||  ||||| ||||| |||| ||| u
                  augguu uacg AUCUGG  CUGUU CACGU AUgc aac  
------------gaaaga      -    a      CC     -     U    u   g 

Annotation confidence Not enough data

Genome context

reftig_1: 1336385-1336487 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from csa-mir-92a

Mature csa-miR-92a

• Accession: MIMAT0006123
• Description: Ciona savignyi csa-miR-92a mature miRNA
• Sequence: 66 - UAUUGCACUUGUCCCGGUCUA - 86
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080