Stem-loop csa-mir-92b

Accession

MI0007190

Description

Ciona savignyi csa-mir-92b precursor miRNA

Gene family

MIPF0000013; mir-25

Sequence

cccagccugacaaagaccuacugaauacagugcugcggucgguuuaggcgcauuaucucuguugaUAUUGCACUUGUCCCGGUCUUaguaaaguaugacu
(((((((((....((.....)).....))).)))).))((((..((((.(((.((((......)))).))).))))..))))..................

Structure

cccagccugacaaagaccuacugaauacagugcugcgg    uu    c   u    uc 
                                      ucgg  uagg gca uauc  u
                                      ||||  |||| ||| ||||   
                                      GGCC  GUUC CGU AUag  g
--------------------ucaguaugaaaugaUUCU    CU    A   U    uu 

Annotation confidence Not enough data

Genome context

reftig_1: 1335375-1335474 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from csa-mir-92b

Mature csa-miR-92b

• Accession: MIMAT0006124
• Description: Ciona savignyi csa-miR-92b mature miRNA
• Sequence: 66 - UAUUGCACUUGUCCCGGUCUU - 86
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080