miRBase entry: csa-mir-124-2

Stem-loop csa-mir-124-2

Accession

MI0007193

Description

Ciona savignyi csa-mir-124-2 precursor miRNA

Gene family

MIPF0000021; mir-124

Literature search

2 open access papers mention csa-mir-124-2
(2 sentences)

Sequence

gugacguaaaaucaauaaugcgcuucauccgcguuugcugcggaccuucuugugugacaucacaaUAAGGCACGCGGUGAAUGCCAAugaaacgucaucacu
(((((((................(((((..((((((((((((..((((.(((((......))))).))))..))))))))))))..))))))))))))....

Structure

----       aaaaucaauaaugcgc     cc            ga    c     ug 
    gugacgu                uucau  gcguuugcugcg  ccuu uugug  a
    |||||||                |||||  ||||||||||||  |||| |||||   
    uacugca                aaguA  CGUAAGUGGCGC  GGAA aacac  c
ucac       ----------------     AC            AC    U     ua

Annotation confidence Not enough data

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Genome context

reftig_262: 49519-49620 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from csa-mir-124-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature csa-miR-124

Accession	MIMAT0006126
Description	Ciona savignyi csa-miR-124 mature miRNA
Sequence	66 - UAAGGCACGCGGUGAAUGCCAA - 87
Evidence	not_experimental

References

PubMed ID: 18339653
Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
"Fu X, Adamski M, Thompson EM"
"Mol Biol Evol (2008) 25:1067-1080