Stem-loop csa-mir-155

Accession

MI0007198

Description

Ciona savignyi csa-mir-155 precursor miRNA

Sequence

uagcuaauuguacuacucuuacugacgugucacauaauuaacagcaauuacgggacggaucacugagcuguagugauacagaaagucagcgcaucuguaaUUAAUGCUAAUAAGUGAUUUAUGguuucguucuacaaa
.......(((((..((....((((....(((((...((((.((..(((((((((.((....(((...(((((....)))))..)))...))..)))))))))..)).))))..)))))...))))...))..))))).

Structure

uagcuaa     cu  ucuu    acgu     aua    a  gc         -a  gauc   gag     g 
       uugua  ac    acug    gucac   auua ca  aauuacggg  cg    acu   cugua u
       |||||  ||    ||||    |||||   |||| ||  |||||||||  ||    |||   |||||  
       aacau  ug    ugGU    UAGUG   UAAU GU  UUaaugucu  gc    uga   gacau g
------a     cu  -cuu    -AUU     -AA    C  AA         ac  -gac   -aa     a 

Annotation confidence Not enough data

Genome context

reftig_1: 133886-134023 [-]

Mature csa-miR-155

• Accession: MIMAT0006131
• Description: Ciona savignyi csa-miR-155 mature miRNA
• Sequence: 101 - UUAAUGCUAAUAAGUGAUUUAUG - 123
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080