Stem-loop sequence gma-MIR162a

Accession

MI0007208 (change log)

Previous IDs

gma-MIR162

Description

Glycine max miR162a stem-loop

Gene family

MIPF0000127; MIR162_1

Literature search

10 open access papers mention gma-MIR162a
(15 sentences)

Stem-loop

   --    a u a          c    c       uc   c  aa  -gu  u 
5'   guga g c cuggaugcag gguu aucgauc  uuc ug  uc   ug u
     |||| | | |||||||||| |||| |||||||  ||| ||  ||   || u
3'   cacu c g gaccuacguc ccaa uagcuag  aag ac  ag   ac a
   cu    - - c          u    a       cu   u  ca  acu  a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr6: 20376062-20376163 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0007208

Mature sequence gma-miR162a

• Accession: MIMAT0007353
• Previous IDs: gma-miR162
• Sequence: 73 - ucgauaaaccucugcaucca - 92
• Evidence: experimental; 454 [1], Illumina [2]

References

1. PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots" Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O BMC Genomics. 9:160(2008).
2. PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).