miRBase entry: gma-MIR1520a

Stem-loop gma-MIR1520a


Accession
MI0007235
Description
Glycine max gma-MIR1520a precursor miRNA
Gene family
MIPF0000581; MIR1520

Literature search
2 open access papers mention gma-MIR1520a
(2 sentences)

Sequence

aaaggaauguugaccgucaugugucauguucuuauuggaugaugacuguugugucauguucugauuggucaaugaaaauaacaaugcauuucaucuuuuauggaguugacauccaauUAGAACAUGAUACAUGACAGUCAucauccaaua
..((((((((.(((........)))))))))))((((((((((((((((((((((((((((((((((((((((....((((..(((.....)))...))))...)))))...)))))))))))))))))))..)))))))))))))))).

Structure
aaaggaauguugaccgucaugugucauguucuu                --                   ---     gaaa    -ca   c 
                                 auuggaugaugacugu  ugugucauguucugauugg   ucaau    auaa   aug a
                                 ||||||||||||||||  |||||||||||||||||||   |||||    ||||   ||| u
                                 uaaccuacuACUGACA  ACAUAGUACAAGAUuaacc   aguug    uauu   uac u
--------------------------------a                GU                   uac     -agg    uuc   u 


Annotation confidence Not enough data
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Genome context
chr14: 17975535-17975684 [-]

Database links

Mature gma-miR1520a

Accession MIMAT0007381
Description Glycine max gma-miR1520a mature miRNA
Sequence 118 - UAGAACAUGAUACAUGACAGUCA - 140
Evidence experimental
454 [1]

References

  1. PubMed ID: 18402695
    Novel and nodulation-regulated microRNAs in soybean roots
    Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
    BMC Genomics (2008) 9:160