miRBase entry: gma-MIR1529

Stem-loop gma-MIR1529


Accession
MI0007248
Description
Glycine max gma-MIR1529 precursor miRNA
Gene family
MIPF0001062; MIR1521


Sequence

aauuagauguuaaucauuaauugucuaccuucacuauuuuauuaaacguuuaucguuacaugucacgauuuuauuaaacauuaauuuuauguaccuaauuaacguuaacuuccaauaaaauuaggaugcgugauaaucaacauuuaauaaaaguacgacacuuaacgaUUAAAGGAAACAAUUAAUCGUUAacguucaauu
((((.(((((((((.(((((((((.(.((((....................(((((((..((((....((((((((((..((.(((((((((((((((((..................))))))).))))))).))).))..))))))))))....))))..)))))))..))))).))))))))).))))))))).))))

Structure
    a         c         c a    cacuauuuuauuaaacguuu       ca    acga          ca  a   -       -       aacguuaa 
aauu gauguuaau auuaauugu u ccuu                    aucguua  uguc    uuuuauuaaa  uu auu uuaugua ccuaauu        c
|||| ||||||||| ||||||||| | ||||                    |||||||  ||||    ||||||||||  || ||| ||||||| |||||||         
uuaa uugcaAUUG UAAUUAACA A GGAA                    Uagcaau  acag    aaaauaauuu  aa uaa agugcgu ggauuaa        u
    c         C         A -    ------------------AU       uc    caug          ac  c   u       a       aauaaccu 


Annotation confidence Not enough data
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Genome context
chr1: 54737797-54737997 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR1529
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR1529

Accession MIMAT0007391
Description Glycine max gma-miR1529 mature miRNA
Sequence 169 - UUAAAGGAAACAAUUAAUCGUUA - 191
Evidence experimental
454 [1]

References

  1. PubMed ID: 18402695
    Novel and nodulation-regulated microRNAs in soybean roots
    Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
    BMC Genomics (2008) 9:160