miRBase entry: mdo-mir-1544a

Stem-loop mdo-mir-1544a


Accession
MI0007269
Description
Monodelphis domestica mdo-mir-1544a precursor miRNA
Gene family
MIPF0001645; mir-1544


Sequence

36336 reads, 644 reads per million, 5 experiments
agcagcugccccUGCACCCAGGGAUAGGAUAGCGguucacuuggaagcccCCUUUUCUAUCCCUGGUACUGGCgccgcugcu
((((((.((.((.....((((((((((((.((.((((........))))..)).))))))))))))....)).)).))))))

Structure
      u  c  UGCAC            U  -C    cac 
agcagc gc cc     CCAGGGAUAGGA AG  Gguu   u
|||||| || ||     |||||||||||| ||  ||||    
ucgucg cg GG     GGUCCCUAUCUU UC  ccga   u
      c  C  -UCAU            U  Cc    agg 


Annotation confidence High
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Comments
This sequence is referred to by the unofficial identifier Mdo-202a in [1].

Genome context
chrX: 14005428-14005509 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from mdo-mir-1544a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-1544a-5p

Accession MIMAT0006144
Description Monodelphis domestica mdo-miR-1544a-5p mature miRNA
Sequence 13 - UGCACCCAGGGAUAGGAUAGCG - 34
Evidence experimental
cloned [1], Illumina [2]
Database links
Predicted targets

Mature mdo-miR-1544a-3p

Accession MIMAT0026768
Description Monodelphis domestica mdo-miR-1544a-3p mature miRNA
Sequence 51 - CCUUUUCUAUCCCUGGUACUGGC - 73
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45