miRBase entry: mdo-mir-1546

Stem-loop mdo-mir-1546


Accession
MI0007271
Description
Monodelphis domestica mdo-mir-1546 precursor miRNA


Sequence

129991 reads, 2177 reads per million, 5 experiments
augccuugccggaaaUCAGGGAUUCUCAGGGAUGGAAgugagacaaaauaccuuCCACCUCUCAGAAUCCCUAUUUucuuucaaggccc
..((((((..(((((..(((((((((.((((.((((((.............)))))).)))).)))))))))..)))))..))))))..

Structure
au      cc     UC         C    A      ugaga 
  gccuug  ggaaa  AGGGAUUCU AGGG UGGAAg     c
  ||||||  |||||  ||||||||| |||| ||||||     a
  cggaac  ucuUU  UCCCUAAGA UCUC ACCuuc     a
cc      uu     UA         C    C      cauaa 


Annotation confidence High
Do you think this miRNA is real?
Comments
This sequence is referred to by the unofficial identifier Mdo-254 in [1].

Genome context
chr3: 518067372-518067460 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-1546
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-1546-5p

Accession MIMAT0006146
Description Monodelphis domestica mdo-miR-1546-5p mature miRNA
Sequence 16 - UCAGGGAUUCUCAGGGAUGGAA - 37
Evidence experimental
cloned [1], Illumina [2]
Database links
Predicted targets

Mature mdo-miR-1546-3p

Accession MIMAT0026770
Description Monodelphis domestica mdo-miR-1546-3p mature miRNA
Sequence 55 - CCACCUCUCAGAAUCCCUAUUU - 76
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45