Stem-loop gga-mir-1550

Accession

MI0007275

Description

Gallus gallus gga-mir-1550 precursor miRNA

Literature search

1 open access papers mention gga-mir-1550
(1 sentences)

Sequence

20 reads, 1 reads per million, 5 experiments

ccagaccugugcaggcuugggcUGAUGGGGGUGUAGUGCAGCAgcuauuuaucaugCUUCACUUACACUGCUCACUGGUcuaagcugcaccacccggg
((.(....((((((.(((((((((.(((((((((((((.((((...........)))).))).)))))).)))).)))))))))))))))...).)).

Structure

-  a accu      g         A    -      -   C    gcua 
 cc g    gugcag cuugggcUG UGGG GGUGUA GUG AGCA    u
 || |    |||||| ||||||||| |||| |||||| ||| ||||    u
 gg c    cacguc gaaucUGGU ACUC UCACAU CAC UCgu    u
g  c -cac      -         C    G      U   U    acua 

Annotation confidence Not enough data

Genome context

chr12: 12877182-12877279 [+]

Mature gga-miR-1550-5p

• Accession: MIMAT0007403
• Description: Gallus gallus gga-miR-1550-5p mature miRNA
• Sequence: 23 - UGAUGGGGGUGUAGUGCAGCA - 43
• Evidence: experimental ; Illumina [1]

Mature gga-miR-1550-3p

• Accession: MIMAT0007404
• Description: Gallus gallus gga-miR-1550-3p mature miRNA
• Sequence: 57 - CUUCACUUACACUGCUCACUGGU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964