miRBase entry: gga-mir-1553

Stem-loop gga-mir-1553


Accession
MI0007278
Description
Gallus gallus gga-mir-1553 precursor miRNA


Sequence

4 reads, 0 reads per million, 1 experiments
gaggaccaguuggcagcucucacacAGUCCUGUCCUGUCUACCUACUGUcuguccuguccUGUGGUGGGAGGACAGUGAUGUgggagagggccacuuucagcuuu
(..((..(((.(((..(((((.((((.(((((((((.((((((.((.(.(......).)..))))))))))))))).)))))).))))).)))))).))..)...

Structure
--- ag  cc   u   ag     a    G  -       G      U  -U U ug 
   g  ga  agu ggc  cucuc cacA UC CUGUCCU UCUACC AC  G c  u
   |  ||  ||| |||  ||||| |||| || ||||||| |||||| ||  | |   
   c  cu  uca ccg  gagag gUGU AG GACAGGA GGGUGG UG  c g  c
uuu ga  -u   -   -g     g    -  U       -      -  Uc u uc 


Annotation confidence Not enough data
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Genome context
chr7: 23871794-23871898 [+]

Database links

Mature gga-miR-1553-5p

Accession MIMAT0007409
Description Gallus gallus gga-miR-1553-5p mature miRNA
Sequence 26 - AGUCCUGUCCUGUCUACCUACUGU - 49
Evidence experimental
Illumina [1]

Mature gga-miR-1553-3p

Accession MIMAT0007410
Description Gallus gallus gga-miR-1553-3p mature miRNA
Sequence 61 - UGUGGUGGGAGGACAGUGAUGU - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964