Stem-loop sequence gga-mir-1562

Accession

MI0007287 (change log)

Description

Gallus gallus miR-1562 stem-loop

Literature search

1 open access papers mention gga-mir-1562
(7 sentences)

Stem-loop

   aucaa    c g   --   g          gaugga     u   u    g g 
5'      caag g ggu  gca cugcacugua      ggggc gca gaag u g
        |||| | |||  ||| ||||||||||      ||||| ||| |||| |  
3'      guuc c uca  cgu gacgugacgu      ccccg ugu cuuu a a
   ---ug    a g   cu   g          -augug     -   -    g u 

Deep sequencing

2 reads, 0 reads per million, 1 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr8: 24243083-24243184 [+]
• Overlapping transcripts:

  sense

  ENSGALT00000017177 ; OSBPL9-201; intron 10

Database links

• EntrezGene:MIR1562
• miRBase Tracker:MI0007287

Mature sequence gga-miR-1562-5p

• Accession: MIMAT0007420
• Previous IDs: gga-miR-1562
• Sequence: 22 - gcacuguagauggaggggcugc - 43
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1562-5p
  • miRDB:gga-miR-1562-5p

Mature sequence gga-miR-1562-3p

• Accession: MIMAT0007421
• Previous IDs: gga-miR-1562*
• Sequence: 62 - ugugccccguguaugcagugca - 83
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1562-3p
  • miRDB:gga-miR-1562-3p

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).