Stem-loop sequence gga-mir-1587

Accession

MI0007314 (change log)

Description

Gallus gallus miR-1587 stem-loop

Literature search

2 open access papers mention gga-mir-1587
(2 sentences)

Stem-loop

       -cc  -c      c   -cu   cu   c    c     ag    g 
5' ggcg   gc  ggggca ggg   ggg  ggg uggg agcgg  cgcg c
   ||||   ||  |||||| |||   |||  ||| |||| |||||  ||||  
3' ucgc   ug  ucccgu ccu   ucu  ucc gccc ucguc  gcgc a
       caa  cu      -   ucu   uu   u    -     -g    u 

Deep sequencing

132 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr19: 1798669-1798764 [-]
• Overlapping transcripts:

  sense

  ENSGALT00000044891 ; intron 2

Clustered miRNAs

< 10kb from gga-mir-1587

• gga-mir-1587: chr19: 1798669-1798764 [-]
• gga-mir-1354: chr19: 1792020-1792095 [-]

Database links

• EntrezGene:MIR1587
• miRBase Tracker:MI0007314

Mature sequence gga-miR-1587

• Accession: MIMAT0007449
• Sequence: 17 - gggcugggcugggcugggca - 36
• Deep sequencing: 128 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1587
  • miRDB:gga-miR-1587

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).