Stem-loop sequence gga-mir-1662

Accession

MI0007396 (change log)

Description

Gallus gallus miR-1662 stem-loop

Gene family

MIPF0000918; mir-1662

Literature search

3 open access papers mention gga-mir-1662
(15 sentences)

Stem-loop

      a              u aua        guaug 
5' ucu uggguuugacauca c   cuugggau     a
   ||| |||||||||||||| |   ||||||||      
3' aga acccggacuguagu g   gaacccug     c
      -              c gac        aaaca 

Deep sequencing

18945 reads, 200 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (Gallus_gallus-5.0; GCA_000002315.3)	Overlapping transcripts
chr2: 1839179-1839251 [+]	sense ENSGALT00000045060 ; VIPR1-202; intron 8 ENSGALT00000008443 ; VIPR1-201; intron 9
AADN04011454.1: 4786-4858 [-]	sense ENSGALT00000045060 ; VIPR1-202; intron 8 ENSGALT00000008443 ; VIPR1-201; intron 9

Database links

• EntrezGene:MIR1662
• RNAcentral:URS000075D74B_9031
• miRBase Tracker:MI0007396

Mature sequence gga-miR-1662

• Accession: MIMAT0007543
• Sequence: 10 - uugacaucaucauacuugggau - 31
• Deep sequencing: 18944 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00000FC42C_9031
• Predicted targets:
  • TargetScanVert:gga-miR-1662
  • miRDB:gga-miR-1662

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).