Stem-loop gga-mir-1677

Accession

MI0007411

Description

Gallus gallus gga-mir-1677 precursor miRNA mir-1677

Gene
family

RF04254; mir-1677

Literature search

4 open access papers mention gga-mir-1677
(6 sentences)

Sequence

9873 reads, 107 reads per million, 5 experiments

agggucugaUCCUGCACCGCUGAAGUCAAUggaaguuuugucauUGACUUCAGUAGGAGCAGGAUUugaaccu
(((.((.((((((((.((((((((((((((((........)))))))))))))).)).)))))))).)).)))

Structure

   g  u        A  -              aag 
agg uc gaUCCUGC CC GCUGAAGUCAAUgg   u
||| || |||||||| || ||||||||||||||    
ucc ag UUAGGACG GG UGACUUCAGUuacu   u
   a  u        A  A              guu 

Annotation confidence High

Genome context

chr3: 74231861-74231933 [+]

Mature gga-miR-1677-5p

• Accession: MIMAT0007562
• Description: Gallus gallus gga-miR-1677-5p mature miRNA
• Sequence: 10 - UCCUGCACCGCUGAAGUCAAU - 30
• Evidence: experimental ; Illumina [1]

Mature gga-miR-1677-3p

• Accession: MIMAT0007563
• Description: Gallus gallus gga-miR-1677-3p mature miRNA
• Sequence: 45 - UGACUUCAGUAGGAGCAGGAUU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964