Stem-loop sequence gga-mir-1677

Accession

MI0007411 (change log)

Description

Gallus gallus miR-1677 stem-loop

Gene family

MIPF0000849; mir-1677

Literature search

4 open access papers mention gga-mir-1677
(6 sentences)

Stem-loop

      g  u        a  -              aag 
5' agg uc gauccugc cc gcugaagucaaugg   u
   ||| || |||||||| || ||||||||||||||    
3' ucc ag uuaggacg gg ugacuucaguuacu   u
      a  u        a  a              guu 

Deep sequencing

12267 reads, 80 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr3: 74231861-74231933 [+]
• Overlapping transcripts:

  sense

  ENSGALT00000025144 ; EPHA7-201; intron 5

Database links

• EntrezGene:MIR1677
• RNAcentral:URS000075A043_9031
• miRBase Tracker:MI0007411

Mature sequence gga-miR-1677-5p

• Accession: MIMAT0007562
• Previous IDs: gga-miR-1677*
• Sequence: 10 - uccugcaccgcugaagucaau - 30
• Deep sequencing: 715 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1677-5p
  • miRDB:gga-miR-1677-5p

Mature sequence gga-miR-1677-3p

• Accession: MIMAT0007563
• Previous IDs: gga-miR-1677
• Sequence: 45 - ugacuucaguaggagcaggauu - 66
• Deep sequencing: 11552 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000075E98B_9031
• Predicted targets:
  • TargetScanVert:gga-miR-1677-3p
  • miRDB:gga-miR-1677-3p

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).